Scientific Resources
Our Publicly Available Data
Link to our Barcode of Life Datasystems publicly available DNA:
Acanthocyclops americanus, Mesocyclops pehpeiensis, Limnoithona tetraspina
Link to open high-throughput zooplankton sequence data on NCBI Genbank, BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA681923'
One of my first publications on the diversity of copepods in Kane'ohe Bay, Hawai'i. With accession numbers to DNA available in GenBank.
Useful Zooplankton and Copepod Links
Delta Science Program Shiny Apps
NOAA Global Ecosystem Data and Visualization Tools
Marine Planktonic Copepod Identification Resource: Banyuls site
Other Useful Resources
CIPRES Science Gateway - for access to computers stronger than your own, for computationally expensive phylogenetic analyses
California DNA Map - studies of environmental DNA around California
Publications
Jungbluth, M.J., Hanson, K.M., Lenz, P.H., Robinson, H.E., Goetze, E. (2022), Species-specific biomass estimation from gene copy number in metazoan plankton. Limnology and Oceanography: Methods 20, 305–319. doi: 10.1002/lom3.10487
Jungbluth, M.J., Burns, J., Grimaldo, L., Katla, A., and Kimmerer, W. (2021) Feeding habits and novel prey of larval fishes in the northern San Francisco Estuary. Environmental DNA. 3(6), 1059-1080. doi: 10.1002/edn3.226 (Open Access)
Jungbluth, M.J., Lee, C., Patel, C., Ignoffo, T., and Kimmerer, W. (2021). Production of the copepod Pseudodiaptomus forbesi is not enhanced by ingestion of the diatom Aulacoseira granulata during a bloom. Estuaries and Coasts. 44, 1083–1099. doi: 10.1007/s12237-020-00843-9 Online Access: https://rdcu.be/b8lUk
Kersten, O., Vetter, E.W., Jungbluth, M.J., Smith, C. R., & Goetze, E. (2019). Larval assemblages over the abyssal plain in the Pacific are highly diverse and spatially patchy. PeerJ, 36. doi: 10.7717/peerj.7691 (Open Access)
Millette, N.C., Grosse, J., Johnson, W.M., Jungbluth, M.J., and Suter, E. (2018). Hidden in plain sight: The importance of cryptic interactions in marine plankton. Limnology and Oceanography Letters. 3, 341-356. doi: 10.1002/lol2.10084 (Open Access)
Selph, K.E., Goetze, E., Jungbluth, M.J., Lenz, P.H., and Kolker, G. (2018). Microbial food web connections and rates in a subtropical embayment. Marine Ecology Progress Series. 590, 19-34. doi: 10.3354/meps12432
Jungbluth, M.J., Selph, K.E., Lenz, P.H., & Goetze, E. (2017). Species-specific grazing and significant trophic impacts by two species of copepod nauplii, Parvocalanus crassirostris and Bestiolina similis. Marine Ecology Progress Series, 572, 57-76. doi:10.3354/meps12139
Jungbluth, M.J., Selph, K.E., Lenz, P.H., & Goetze, E. (2017). Incubation duration effects on copepod naupliar grazing estimates. Journal of Experimental Marine Biology and Ecology, 494, 54-62. doi: 10.1016/j.jembe.2017.05.005
Roncalli, V., Jungbluth, M.J., Lenz, P.H., (2016). Glutathione S-Transferase regulation in Calanus finmarchicus feeding on the toxic dinoflagellate Alexandrium fundyense. PLoS ONE 11, e0159563. (Open Access)
Goetze, E., & Jungbluth, M.J. (2013). Acetone preservation for zooplankton molecular studies. Journal of Plankton Research, 35(5), 972-981. doi: 10.1093/plankt/fbt035
Jungbluth, M.J, Goetze, E, & Lenz, P.H. (2013). Measuring copepod naupliar abundance in a subtropical bay using quantitative PCR. Marine Biology, 160, 3125-3141. doi: 10.1007/s00227-013-2300-y
Jungbluth, M.J., & Lenz, P.H. (2013). Copepod diversity in a subtropical bay based on a fragment of the mitochondrial COI gene. Journal of Plankton Research, 35(3), 630-643. doi: 10.1093/plankt/fbt015
